PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK18855.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family AP2
Protein Properties Length: 125aa    MW: 14439.8 Da    PI: 9.9366
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK18855.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.5e-1742102156
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56 
                s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g+
  PK18855.1  42 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWGH 102
                57*******************999955656446*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-1342102IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-1842111IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-1743110IPR001471AP2/ERF domain
PROSITE profilePS5103220.21843109IPR001471AP2/ERF domain
SMARTSM003801.0E-2643115IPR001471AP2/ERF domain
PRINTSPR003673.5E-64455IPR001471AP2/ERF domain
PRINTSPR003673.5E-691111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MAKLSQKNNS ANVNTNNNGT HVPKVKRTRR SVPRDSPPQR SSIYRGVTRH RWTGRYEAHL  60
WDKNCWNESQ NKKGRQVYLG AYDDEEAAAH AYDLAALKYW GHDTILNFPL STYEKELKDM  120
EGVAX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440585.12e-66PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN43e-47AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D2Q6I22e-66A0A0D2Q6I2_G
STRINGPOPTR_0006s19360.11e-64(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.13e-43ARIA-interacting double AP2 domain protein